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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6144825_6146061_F

Intron Information:

Intron Rank:
136153
Intron Class:
major
Intron Phase:
Intron Coordinates:
6144825 - 6146061
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGAAA
5'SS Class:
major
3'SS Sequence:
CTTGCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTTCCTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
0.9
73.3
32.3
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
79.7
0.67
0.9
76.5
37.6
Minor 5ss
25.5
-2.8
3
29.9
43.2
Minor BPS
72.7
0.79
1.5
89.39
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023374
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024981
6144354 - 6147443
3090