Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61585978_61586615_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61585978 - 61586615

Intron Length:

638

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTCCA

5'SS Class:

strong_major

3'SS Sequence:

TGTCCTTACCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTCAT

U12 Branch Point Sequence:

TTGTCCTTACCC

Flanking Amino Acid:

YDNCTMCTCKDSTVICKKRC

Intron Amino Acid Position:

195

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

71.6

40.2

Major BPS

78.6

0.71

79.6

32.9

Major PPT

73.2

0.52

0.9

65.7

Minor 5ss

33.1

-1.9

3.1

41.9

44.7

Minor BPS

75.3

0.77

1.6

82.14

38.4

Associated Gene:

Gene:

BMPER

Ensembl Gene ID:

ENSAPLG00000011811

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033179

61506232 - 61661511

155280

ENSAPLT00000012375

61507312 - 61661511

154200