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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_616422_616715_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
616422 - 616715
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTGCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TTTTCCCTAATG
Flanking Amino Acid:
LYDFLLTALESCYEHIQRMR
Intron Amino Acid Position:
935

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
75.6
0.58
1
68.7
42
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
73.4
0.6
1.7
80.27
35.6

Associated Gene:

Gene:
ALS2CL
Ensembl Gene ID:
ENSAPLG00000005280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022344
616350 - 641213
24864
ENSAPLT00000019967
616350 - 658098
41749
ENSAPLT00000005504
616350 - 658098
41749
ENSAPLT00000038866
616350 - 640574
24225