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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_616813_617874_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
616813 - 617874
Intron Length:
1062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TTTGTTCCAATT
Flanking Amino Acid:
PLLMYVVSRAKIQHLGAEIH
Intron Amino Acid Position:
902

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
73.6
37.1
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
82
0.72
0.7
76.2
32.4
Minor 5ss
34.7
-1.7
3.2
43.8
38
Minor BPS
48
-0
1.9
71.91
39.9

Associated Gene:

Gene:
ALS2CL
Ensembl Gene ID:
ENSAPLG00000005280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038866
616350 - 640574
24225
ENSAPLT00000022344
616350 - 641213
24864
ENSAPLT00000019967
616350 - 658098
41749
ENSAPLT00000005504
616350 - 658098
41749