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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61746365_61758728_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61746365 - 61758728
Intron Length:
12364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCCA
5'SS Class:
major
3'SS Sequence:
TTTTCTAATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTCTAATG
Flanking Amino Acid:
EWGSFYYSFKTEQLVTLWIL
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
56.7
42.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.9
0.74
0.9
78.7
33.4
Minor 5ss
29.3
-2.4
3.4
39.7
45.8
Minor BPS
62.3
0.25
1.7
71.16
36.4

Associated Gene:

Gene:
NPSR1
Ensembl Gene ID:
ENSAPLG00000011804
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012277
61746218 - 61802780
56563