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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61758862_61783931_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61758862 - 61783931
Intron Length:
25070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTTTTCACA
Flanking Amino Acid:
TFFVTQLAITDSFTGLINIM
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.9
30.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
89.3
0.88
0.6
84.3
23.5
Minor 5ss
33.9
-1.8
2.8
41.5
45.1
Minor BPS
61.7
0.36
1.7
75.92
35.5

Associated Gene:

Gene:
NPSR1
Ensembl Gene ID:
ENSAPLG00000011804
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012277
61746218 - 61802780
56563