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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61789774_61798197_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61789774 - 61798197
Intron Length:
8424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCCGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
TGCTTCATAATA
Flanking Amino Acid:
LVYFIPLIIISIIYSIVIRT
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
80.6
0.69
0.7
77.3
24.6
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
60
0.31
1.6
68.44
38.2

Associated Gene:

Gene:
NPSR1
Ensembl Gene ID:
ENSAPLG00000011804
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012277
61746218 - 61802780
56563