About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61798275_61800184_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61798275 - 61800184
Intron Length:
1910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CTTTCACTAACT
Flanking Amino Acid:
AQAVIISSCPDGKTSSAGYT
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
77.7
0.69
1
81
30.2
Major PPT
78.3
0.64
0.8
70.1
35.8
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
64.1
0.52
2
86.18
39.4

Associated Gene:

Gene:
NPSR1
Ensembl Gene ID:
ENSAPLG00000011804
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012277
61746218 - 61802780
56563