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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61805070_61805662_R

Intron Information:

Intron Rank:
142912
Intron Class:
major
Intron Phase:
Intron Coordinates:
61805070 - 61805662
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGTAA
5'SS Class:
major
3'SS Sequence:
TTTTGAATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
62.8
40.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
73.7
0.53
0.9
71.5
38.4
Minor 5ss
40.2
-1.1
3.5
54.8
49.4
Minor BPS
53.3
-0
2.1
65.77
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045641
61804147 - 61809091
4945