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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6181330_6185383_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6181330 - 6185383
Intron Length:
4054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TGATACTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
GCATGCGTAACT
Flanking Amino Acid:
GASHNKKILQVLSDVFNAPV
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.8
38.5
Major BPS
84
0.85
0.9
75
39.9
Major PPT
70.1
0.45
0.9
66.4
40.1
Minor 5ss
35.1
-1.7
2.7
42.5
44.3
Minor BPS
48.5
-0
2.4
69.24
47.2

Associated Gene:

Gene:
XYLB
Ensembl Gene ID:
ENSAPLG00000012716
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026867
6169858 - 6247684
77827
ENSAPLT00000018671
6169858 - 6252219
82362
ENSAPLT00000013278
6169858 - 6251107
81250
ENSAPLT00000045187
6169858 - 6252219
82362