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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61831311_61833411_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61831311 - 61833411
Intron Length:
2101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTATC
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
NHPHYEDAGLRPGCSMPEIW
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
85.3
32.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.4
0.75
0.8
82
34.8
Minor 5ss
45.8
-0.4
2.6
63
41.5
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021295
61831154 - 61880356
49203