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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61842856_61843611_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61842856 - 61843611
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTGA
5'SS Class:
major
3'SS Sequence:
ATTTCCATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTCCATT
Flanking Amino Acid:
AAEFDFMEKETPVRYTKTLL
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.8
40.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.2
0.61
0.8
71.5
33.5
Minor 5ss
43.3
-0.7
2.9
56.8
47.3
Minor BPS
47.7
-0.1
1.9
71.94
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039197
61831154 - 61880356
49203
ENSAPLT00000030872
61830363 - 61880356
49994
ENSAPLT00000021295
61831154 - 61880356
49203
ENSAPLT00000012021
61831154 - 61880356
49203
ENSAPLT00000041640
61831154 - 61880356
49203