About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61844597_61849032_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61844597 - 61849032
Intron Length:
4436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATGTATTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTTTATTTCATT
Flanking Amino Acid:
YYAASLVVIWVIQGCAWLFG
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
69.2
0.43
1.1
72.3
42
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
55.5
0.25
1.9
77.31
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039197
61831154 - 61880356
49203