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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61847010_61849032_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61847010 - 61849032
Intron Length:
2023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATATCTTACCT
Flanking Amino Acid:
YYAASLVVIWGILELSPRVF
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
100
1.24
0.5
100
0
Major PPT
76
0.59
0.9
76
37.5
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
65.7
0.57
1.6
81.58
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028841
61831154 - 61880356
49203
ENSAPLT00000021295
61831154 - 61880356
49203
ENSAPLT00000012021
61831154 - 61880356
49203
ENSAPLT00000041640
61831154 - 61880356
49203
ENSAPLT00000030872
61830363 - 61880356
49994