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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61851899_61853152_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61851899 - 61853152
Intron Length:
1254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACCG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AAATTGTTAACT
Flanking Amino Acid:
QFAQFVLLTQIASLFAVCIM
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
69
41.8
Major BPS
100
1.24
0.5
100
0
Major PPT
81.9
0.72
0.8
74.5
35
Minor 5ss
32.3
-2
3
40
45.5
Minor BPS
59.7
0.38
2
76.2
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012021
61831154 - 61880356
49203
ENSAPLT00000039197
61831154 - 61880356
49203
ENSAPLT00000030872
61830363 - 61880356
49994
ENSAPLT00000028841
61831154 - 61880356
49203
ENSAPLT00000021295
61831154 - 61880356
49203