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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61865868_61871467_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61865868 - 61871467
Intron Length:
5600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTTCAGAAACT
Flanking Amino Acid:
TLQRFNLYPEVVLASWYRIY
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
77.3
0.68
1
81.5
27
Major PPT
72.2
0.5
0.9
65.9
40.9
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
51.6
0.13
2.5
84.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012021
61831154 - 61880356
49203
ENSAPLT00000039197
61831154 - 61880356
49203
ENSAPLT00000030872
61830363 - 61880356
49994
ENSAPLT00000028841
61831154 - 61880356
49203
ENSAPLT00000021295
61831154 - 61880356
49203
ENSAPLT00000041640
61831154 - 61880356
49203