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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61873656_61879698_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61873656 - 61879698
Intron Length:
6043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTTTCCTTTACA
Flanking Amino Acid:
MAAFAGVLHWC
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
86.4
0.82
0.8
80.2
31.9
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
77.7
0.87
1.5
84.68
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039197
61831154 - 61880356
49203
ENSAPLT00000030872
61830363 - 61880356
49994
ENSAPLT00000021295
61831154 - 61880356
49203
ENSAPLT00000041640
61831154 - 61880356
49203