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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61908510_61913508_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61908510 - 61913508
Intron Length:
4999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAAACAT
U12 Branch Point Sequence:
TGTAGTGCAAAC
Flanking Amino Acid:
GDDSQATQSRGSAFTTSDNL
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
50.9
0.02
1.1
59
36.1
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
36.9
-1
2.3
49.2
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011066
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011528
61908169 - 61943205
35037