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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_619144_619525_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
619144 - 619525
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAG
U12 Branch Point Sequence:
TCTTCCAGAGGC
Flanking Amino Acid:
LKDLTLTTNQRRSLIKDKCF
Intron Amino Acid Position:
832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
46.4
-0.2
1.7
61.8
44.5
Major PPT
83.5
0.75
0.8
80.5
31.5
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
44.5
-0.4
2.2
60.22
44.6

Associated Gene:

Gene:
ALS2CL
Ensembl Gene ID:
ENSAPLG00000005280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038866
616350 - 640574
24225
ENSAPLT00000022344
616350 - 641213
24864
ENSAPLT00000019967
616350 - 658098
41749
ENSAPLT00000005504
616350 - 658098
41749