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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61929930_61934954_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61929930 - 61934954
Intron Length:
5025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TGCCTTGTAACT
Flanking Amino Acid:
TNNELDQHGHIILNSMHKYQ
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
77.5
32.9
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
92.6
0.96
0.6
88.3
21.3
Minor 5ss
32
-2.1
2.7
35.9
33.5
Minor BPS
49.5
0.04
2
69.12
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011066
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011528
61908169 - 61943205
35037