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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61935064_61940188_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61935064 - 61940188
Intron Length:
5125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTAGA
5'SS Class:
major
3'SS Sequence:
CTGTGTCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AGGTTTTGATGT
Flanking Amino Acid:
AGKADPPLPARLYVHPDSPF
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
71.8
39.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.2
0.61
0.9
73.6
37
Minor 5ss
37.5
-1.4
2.4
43.5
43.5
Minor BPS
42.7
-0.4
1.8
54.99
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011066
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011528
61908169 - 61943205
35037