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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61940354_61941593_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61940354 - 61941593
Intron Length:
1240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGCCTTTATT
Flanking Amino Acid:
GTEMIITKSGRRMFPTIRVS
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.9
0.67
0.9
77
35.9
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
70.7
0.73
1.7
87.87
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011066
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011528
61908169 - 61943205
35037