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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61941829_61943147_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61941829 - 61943147
Intron Length:
1319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
CCGACCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCCTCCCCGACC
Flanking Amino Acid:
EPTESTIKPLEQFVEKSSCA
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
61.9
0.27
0.9
54
30.8
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
49.3
-0
1.9
62.87
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011066
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011528
61908169 - 61943205
35037