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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61945246_61945967_R

Intron Information:

Intron Rank:
135511
Intron Class:
major
Intron Phase:
Intron Coordinates:
61945246 - 61945967
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAACTTG
5'SS Class:
major
3'SS Sequence:
CTTTTTTACCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTTTTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
63.4
43.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.8
0.74
0.8
77
36.3
Minor 5ss
47.3
-0.3
3
64.8
46.6
Minor BPS
64.7
0.44
1.6
72.92
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020339
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043558
61944328 - 61946388
2061