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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_619569_621060_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
619569 - 621060
Intron Length:
1492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CATCTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GCCTTCTAAACC
Flanking Amino Acid:
MPAKCVDGETRHLWPLKDLT
Intron Amino Acid Position:
753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
32.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
80.9
0.7
0.8
77.3
31
Minor 5ss
35.9
-1.6
3.5
51.5
45.7
Minor BPS
56.7
0.19
1.7
61.92
43.9

Associated Gene:

Gene:
ALS2CL
Ensembl Gene ID:
ENSAPLG00000005280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038866
616350 - 640574
24225