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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_620566_621060_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
620566 - 621060
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTGCCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAG
U12 Branch Point Sequence:
CCCAACAGGACT
Flanking Amino Acid:
MPAKCVDGETSDQKACSVVL
Intron Amino Acid Position:
759

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
32.7
Major BPS
49.7
-0
1.5
57.6
37.5
Major PPT
66.8
0.38
0.9
61.6
34.9
Minor 5ss
35.9
-1.6
3.5
51.5
45.7
Minor BPS
39.9
-0.7
1.8
50.52
43.2

Associated Gene:

Gene:
ALS2CL
Ensembl Gene ID:
ENSAPLG00000005280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022344
616350 - 641213
24864
ENSAPLT00000019967
616350 - 658098
41749
ENSAPLT00000005504
616350 - 658098
41749