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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62145471_62146775_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62145471 - 62146775
Intron Length:
1305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TTTTCTTATGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATGT
Flanking Amino Acid:
MVMGAMLLVYLHQAGWFPFR
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
71.5
33.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.5
0.78
0.8
81.9
28.9
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
62
0.46
1.9
81.65
40.2

Associated Gene:

Gene:
HERPUD2
Ensembl Gene ID:
ENSAPLG00000030062
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029367
62144779 - 62148495
3717