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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62147100_62148484_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62147100 - 62148484
Intron Length:
1385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATAAGAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AGTTTTTTGATT
Flanking Amino Acid:
YSFIQAAVSAQVT
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.1
63.1
34.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
40
-1.1
3.6
59.2
45.8
Minor BPS
66.7
0.61
1.1
76.91
33.5

Associated Gene:

Gene:
HERPUD2
Ensembl Gene ID:
ENSAPLG00000030062
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029367
62144779 - 62148495
3717