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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62217889_62251430_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62217889 - 62251430
Intron Length:
33542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TTTTACTGAAGC
Flanking Amino Acid:
RGFEFTLMVVGESGLGKSTL
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
84.8
0.78
0.7
77.9
36.6
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
59.8
0.29
2
76.54
39.2

Associated Gene:

Gene:
SEPTIN7
Ensembl Gene ID:
ENSAPLG00000009772
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024379
62199956 - 62275692
75737
ENSAPLT00000010245
62199956 - 62275596
75641