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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62251538_62257268_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62251538 - 62257268
Intron Length:
5731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTCATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATCTCATTCATT
Flanking Amino Acid:
PSHRIKKTVQVEQSKVLIKE
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
38.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.1
0.74
0.8
76.5
36.6
Minor 5ss
39.1
-1.2
3.3
58.7
45.8
Minor BPS
54.2
0.21
2
75.24
41.9

Associated Gene:

Gene:
SEPTIN7
Ensembl Gene ID:
ENSAPLG00000009772
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024379
62199956 - 62275692
75737
ENSAPLT00000010245
62199956 - 62275596
75641