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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62263504_62265069_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62263504 - 62265069
Intron Length:
1566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
GTCTCAAGAAAA
Flanking Amino Acid:
GRQYPWGVAEVENGEHCDFT
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
80.7
0.69
0.8
76
32.4
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
43.9
-0.4
2
57.17
41

Associated Gene:

Gene:
SEPTIN7
Ensembl Gene ID:
ENSAPLG00000009772
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024379
62199956 - 62275692
75737
ENSAPLT00000010245
62199956 - 62275596
75641