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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62265871_62269891_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62265871 - 62269891
Intron Length:
4021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
GCCTCTGTATTT
Flanking Amino Acid:
DNNKNKGQLTKFDTVEGMSP
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
89.5
0.89
0.7
88.9
28.2
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
44.8
-0.3
2.2
59.38
45

Associated Gene:

Gene:
SEPTIN7
Ensembl Gene ID:
ENSAPLG00000009772
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024379
62199956 - 62275692
75737