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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62265871_62272708_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62265871 - 62272708
Intron Length:
6838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GGATTTGTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTCTTCTGGATT
Flanking Amino Acid:
DNNKNKGQLTKSPLAQMEEE
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
62.5
0.28
1.2
57.7
47.2
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
63.3
0.5
1.4
78.91
37.8

Associated Gene:

Gene:
SEPTIN7
Ensembl Gene ID:
ENSAPLG00000009772
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010245
62199956 - 62275596
75641