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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6227053_6228411_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6227053 - 6228411
Intron Length:
1359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTAATA
5'SS Class:
major
3'SS Sequence:
TTCTTTGATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
GTTAACTTAATG
Flanking Amino Acid:
IHRFNSDNQKVSDFPKEVEI
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
73.6
37
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
80.7
0.69
0.9
76.3
36.9
Minor 5ss
35.7
-1.6
3.3
48.9
46.9
Minor BPS
62.5
0.25
1.6
66.31
41.2

Associated Gene:

Gene:
XYLB
Ensembl Gene ID:
ENSAPLG00000012716
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045187
6169858 - 6252219
82362
ENSAPLT00000026867
6169858 - 6247684
77827
ENSAPLT00000018671
6169858 - 6252219
82362
ENSAPLT00000013278
6169858 - 6251107
81250