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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62272845_62274883_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62272845 - 62274883
Intron Length:
2039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTTCTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATGACTT
Flanking Amino Acid:
VQKLKDSEAELQRRHEQMKK
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
81.8
0.72
0.7
77.1
31.1
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
50.2
0.09
2
75.06
41.5

Associated Gene:

Gene:
SEPTIN7
Ensembl Gene ID:
ENSAPLG00000009772
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024379
62199956 - 62275692
75737
ENSAPLT00000010245
62199956 - 62275596
75641