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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6231092_6233767_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6231092 - 6233767
Intron Length:
2676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATACCA
5'SS Class:
major
3'SS Sequence:
TTGTGTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
ATGATTTGAAAA
Flanking Amino Acid:
VDSQTFMALLCFKNGSLMRE
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
59.9
38.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
75.6
0.58
1
73.5
41.9
Minor 5ss
32.5
-2
3
37.8
40.6
Minor BPS
48
-0.1
1.5
56.25
36.5

Associated Gene:

Gene:
XYLB
Ensembl Gene ID:
ENSAPLG00000012716
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013278
6169858 - 6251107
81250
ENSAPLT00000045187
6169858 - 6252219
82362
ENSAPLT00000026867
6169858 - 6247684
77827
ENSAPLT00000018671
6169858 - 6252219
82362