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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62330362_62335601_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62330362 - 62335601
Intron Length:
5240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTGTTTTTTCT
Flanking Amino Acid:
EVVCMTLLENRLMLCWGPAK
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
81.3
0.7
0.9
81.8
30.2
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
41.2
-0.5
3.6
74.6
42.8

Associated Gene:

Gene:
EEPD1
Ensembl Gene ID:
ENSAPLG00000009672
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023374
62329508 - 62390544
61037