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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62330362_62363314_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62330362 - 62363314
Intron Length:
32953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
TTTTTTTTCTCT
Flanking Amino Acid:
EVVCMTLLENSIKLLAVQEL
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
96.3
1.04
0.5
92.6
17.2
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
45.5
-0.2
3.6
82.72
39.3

Associated Gene:

Gene:
EEPD1
Ensembl Gene ID:
ENSAPLG00000009672
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010097
62329508 - 62390858
61351