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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_623332_623942_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
623332 - 623942
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTTAATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CACCTCTTAATT
Flanking Amino Acid:
RKSQEYLFCHRGTEDVSWKI
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
100
1.24
0.5
100
0
Major PPT
81.9
0.72
0.9
72.9
41.7
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
63.7
0.51
1.3
69.76
41.6

Associated Gene:

Gene:
ALS2CL
Ensembl Gene ID:
ENSAPLG00000005280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038866
616350 - 640574
24225
ENSAPLT00000022344
616350 - 641213
24864
ENSAPLT00000019967
616350 - 658098
41749
ENSAPLT00000005504
616350 - 658098
41749