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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6233884_6234312_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6233884 - 6234312
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
AACGCTTCAATT
Flanking Amino Acid:
GMRLQEGDIAISLGTSDTLF
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.2
38.6
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
89.2
0.88
0.7
81.3
30.7
Minor 5ss
35.7
-1.6
2.9
46.8
42.6
Minor BPS
50.2
0.08
1.6
63.26
41.7

Associated Gene:

Gene:
XYLB
Ensembl Gene ID:
ENSAPLG00000012716
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026867
6169858 - 6247684
77827
ENSAPLT00000018671
6169858 - 6252219
82362
ENSAPLT00000013278
6169858 - 6251107
81250
ENSAPLT00000045187
6169858 - 6252219
82362