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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6234354_6235330_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6234354 - 6235330
Intron Length:
977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TTCTCTGTTATT
Flanking Amino Acid:
KVVAFTGDNPASLAGMRLQE
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
81.3
0.7
0.9
77.7
36.1
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
49.4
0.03
2.3
75.01
42.5

Associated Gene:

Gene:
XYLB
Ensembl Gene ID:
ENSAPLG00000012716
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026867
6169858 - 6247684
77827
ENSAPLT00000018671
6169858 - 6252219
82362
ENSAPLT00000013278
6169858 - 6251107
81250
ENSAPLT00000045187
6169858 - 6252219
82362