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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6235413_6236597_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6235413 - 6236597
Intron Length:
1185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTGCC
5'SS Class:
major
3'SS Sequence:
TTTCTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTCACT
Flanking Amino Acid:
GSPVPSHSVLGSISPYYIQR
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.6
35.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.8
0.78
0.6
85.1
22.4
Minor 5ss
40.2
-1.1
3
50
41.8
Minor BPS
66.4
0.6
1.7
83.79
37.4

Associated Gene:

Gene:
XYLB
Ensembl Gene ID:
ENSAPLG00000012716
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013278
6169858 - 6251107
81250
ENSAPLT00000045187
6169858 - 6252219
82362
ENSAPLT00000026867
6169858 - 6247684
77827
ENSAPLT00000018671
6169858 - 6252219
82362