Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62381211_62383634_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62381211 - 62383634

Intron Length:

2424

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACATTAA

5'SS Class:

major

3'SS Sequence:

GTTTTAATTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTTGTTTTAATT

Flanking Amino Acid:

SEKPSGQLHKGVEYSGFLWD

Intron Amino Acid Position:

340

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

73.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

81.2

0.7

0.9

74.9

38.8

Minor 5ss

37.8

-1.4

3.1

49.1

47.1

Minor BPS

67.3

0.62

1.4

78.3

39.3

Associated Gene:

Gene:

EEPD1

Ensembl Gene ID:

ENSAPLG00000009672

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023374

62329508 - 62390544

61037

ENSAPLT00000010097

62329508 - 62390858

61351