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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62384455_62384965_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62384455 - 62384965
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATGCTT
5'SS Class:
major
3'SS Sequence:
CTTGCTCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTGCCCTGTATT
Flanking Amino Acid:
SSSLVNLTSLFGMNDLTLVN
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
68
42.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
75.4
0.57
0.8
69.5
31.2
Minor 5ss
36.9
-1.5
3.5
53.5
44.7
Minor BPS
53.9
0.2
1.8
74.36
42.3

Associated Gene:

Gene:
EEPD1
Ensembl Gene ID:
ENSAPLG00000009672
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023374
62329508 - 62390544
61037