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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62396874_62399863_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62396874 - 62399863
Intron Length:
2990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATATGGA
5'SS Class:
major
3'SS Sequence:
TGTTCCTATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TGTTCCTATACA
Flanking Amino Acid:
RVPHFLQDHARNMTNFGKAT
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1.1
58.7
40.4
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
79.1
0.65
0.9
73.3
36.3
Minor 5ss
38
-1.4
3.2
48.3
47.9
Minor BPS
61.7
0.36
2
76.35
40.5

Associated Gene:

Gene:
KIAA0895
Ensembl Gene ID:
ENSAPLG00000009565
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009954
62396768 - 62425384
28617