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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62399950_62403617_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62399950 - 62403617
Intron Length:
3668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
GCAGAATTAACC
Flanking Amino Acid:
DFHLLTALGKISYEDVDRLK
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
88.3
0.86
0.7
83.7
24.4
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
47.1
-0.2
1.9
54.36
42.8

Associated Gene:

Gene:
KIAA0895
Ensembl Gene ID:
ENSAPLG00000009565
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009954
62396768 - 62425384
28617