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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62401279_62401402_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
62401279 - 62401402
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTAAG
5'SS Class:
major
3'SS Sequence:
ATTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
GGCAAATTCATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
74
38.4
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
86.6
0.82
0.7
81.2
30
Minor 5ss
31
-2.2
2.6
32.6
35
Minor BPS
40.2
-0.6
2
52.53
41.9

Associated Gene:

Gene:
KIAA0895
Ensembl Gene ID:
ENSAPLG00000009565
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043910
62400698 - 62425384
24687