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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62405829_62408739_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62405829 - 62408739
Intron Length:
2911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCATCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GATACCTGGACT
Flanking Amino Acid:
YMVKEGCLGEIVVHLTEDLL
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
75.9
0.58
0.8
73.3
30.4
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
61.2
0.43
1.6
75.11
40.9

Associated Gene:

Gene:
KIAA0895
Ensembl Gene ID:
ENSAPLG00000009565
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043910
62400698 - 62425384
24687
ENSAPLT00000027447
62399864 - 62425384
25521
ENSAPLT00000009954
62396768 - 62425384
28617