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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_624117_624812_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
624117 - 624812
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TCTTGTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAA
U12 Branch Point Sequence:
AGAAGCCTAACG
Flanking Amino Acid:
NEQPDERITKTQLGLKEFPV
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.3
70.2
37.7
Major BPS
62.2
0.3
1
59
38
Major PPT
85.8
0.81
0.8
80.7
31.4
Minor 5ss
34.6
-1.7
2.9
38.7
40.1
Minor BPS
44.5
-0.5
2.1
49.49
43.4

Associated Gene:

Gene:
ALS2CL
Ensembl Gene ID:
ENSAPLG00000005280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038866
616350 - 640574
24225
ENSAPLT00000022344
616350 - 641213
24864
ENSAPLT00000019967
616350 - 658098
41749
ENSAPLT00000005504
616350 - 658098
41749