Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62420522_62425359_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62420522 - 62425359

Intron Length:

4838

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGTATC

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTAATGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

CCCTCTTTAATG

Flanking Amino Acid:

MLESIRVTEKLHWPKQEL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

0.9

81.7

31.9

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

78.3

0.64

0.9

73.9

34.4

Minor 5ss

35.3

-1.7

2.9

46.6

41.8

Minor BPS

63.6

0.29

1.4

57.98

44.9

Associated Gene:

Gene:

KIAA0895

Ensembl Gene ID:

ENSAPLG00000009565

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043910

62400698 - 62425384

24687

ENSAPLT00000027447

62399864 - 62425384

25521

ENSAPLT00000009954

62396768 - 62425384

28617